Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs71193952 chr20:2141274 A/AACACATTAGTCAAATGATC 6.21E-6 473 27.97 33.18 28.42 KM Plot
PRAD rs7122044 chr11:72462634 A/G 0.000164 483 30.53 35.5 23.25 KM Plot
PRAD rs7123876 chr11:72444583 T/C 3.04E-5 485 29.63 34.82 21.18 KM Plot
PRAD rs7125942 chr11:68199213 C/G 1.61E-7 494 29.63 33.6 24.58 KM Plot
PRAD rs71264538 chr8:71950522 TTCTC/T 4.63E-5 490 31.03 29.97 24.27 KM Plot
PRAD rs7128028 chr11:1342819 C/T 1.59E-6 480 61.83 32.63 30.15 KM Plot
PRAD rs71328248 chr22:18452501 C/A 7.63E-8 481 30.53 33.07 26.87 KM Plot
PRAD rs71329331 chr20:2059211 C/CA 3.6E-7 490 28.8 33.6 29.55 KM Plot
PRAD rs71359150 chr17:2129500 C/T 4.52E-5 486 31 31.05 26.1 KM Plot
PRAD rs71377801 chr17:62985602 T/C 7.89E-9 489 30.8 31.37 19.63 KM Plot
PRAD rs71377802 chr17:62985607 A/G 7.89E-9 489 30.8 31.37 19.63 KM Plot
PRAD rs71379903 chr17:62985618 C/T 7.89E-9 489 30.8 31.37 19.63 KM Plot
PRAD rs71423515 chr2:178781157 C/T 4.15E-5 493 30.78 31.93 20.48 KM Plot
PRAD rs71423518 chr2:178796197 A/C 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs71423519 chr2:178796376 C/T 4.13E-5 494 30.77 31.93 20.48 KM Plot